MissedEventsG¶

Implementation of recursion for exact missed-event G function.

Implements the exact-missed event probability calculations, as detailed in Hawkes, Jalali, and Colquhoun (1990). Specifically, this is equation 3.2.

Public Functions

MissedEventsG(DeterminantEq const & _af, std::vector< Root > const & _roots_af, DeterminantEq const & _fa, std::vector< Root > const & _roots_fa, t_uint _nmax = 3)

Initializes missed events G functor.

Parameters

• _af -

  Determinant equation for af.

• _fa -

  Determinant equation for af.

• _roots_af -

  Roots of determinant equation for af

• _roots_fa -

  Roots of determinant equation for fa

• _nmax -

  Switches to asymptotic values after $t\geq n_{\mathrm{max}}\tau$

MissedEventsG(QMatrix const & _qmatrix, t_real _tau, t_RootFinder const & _findroots, t_uint _nmax = 3)

Initializes missed events functor.

Uses input root finding function to determine roots.

Parameters

• _qmatrix -

  Transition matrix

• _tau -

  resolution/max length missed events

• _findroots -

  A functor with which to find all roots. This function should take a DeterminantEq as its sole argument and return a std::vector<DCProgs::RootInterval>

• _nmax -

  Switches to asymptotic values after $t\geq n_{\mathrm{max}}\tau$

MissedEventsG(QMatrix const & _qmatrix, t_real _tau, t_uint _nmax = 3, t_real _xtol = 1e-12, t_real _rtol = 1e-12, t_uint _itermax = 100, t_real _lowerbound = quiet_nan, t_real _upperbound = quiet_nan)

Initializes missed-events functor.

Parameters

• _qmatrix -

  Transition matrix

• _tau -

  resolution/max length missed events

• _nmax -

  Switches to asymptotic values after $t\geq n_{\mathrm{max}}\tau$

• _xtol -

  Tolerance for interval size

• _rtol -

  Tolerance for interval size. The convergence criteria is an affine function of the root: $x_{\mathrm{tol}} + r_{\mathrm{tol}} x_{\mathrm{current}} = \frac{1}{2}|x_a - x_b|$.

• _itermax -

  maximum number of iterations for any of the three steps.

• _lowerbound -

  Lower bound of the interval bracketing all roots. If None, the lower bound is obtained from find_lower_bound_for_roots().

• _upperbound -

  Upper bound of the interval bracketing all roots. If None, the upper bound is obtained from find_upper_bound_for_roots().

MissedEventsG(MissedEventsG && _c)

Move constructor.

t_rmatrix af(t_real _t)

Open to close transitions.

t_rmatrix fa(t_real _t)

Close to open transitions.

t_rmatrix survivor_af(t_real _t)

Probability of no shut times detected between 0 and t.

t_rmatrix survivor_fa(t_real _t)

Probability of no open times detected between 0 and t.

void set_nmax(t_uint _n)

Sets $t\geq n_{\mathrm{max}}\tau$.

t_uint get_nmax()

When to switch to asymptotic values.

t_real get_tau()

Gets the value of missed event resolution;.

t_real get_tmax()

$t_{\mathrm{max}}$ is the time after which approximate calculations are performed.

t_rmatrix const & get_af_factor()

$Q_{AF}e^{-Q_{FF}\tau}$

t_rmatrix const & get_fa_factor()

$Q_{FA}e^{-Q_{AA}\tau}$

t_rmatrix laplace_af(t_real _s)

Exact laplace of AF.

t_rmatrix laplace_fa(t_real _s)

Exact laplace of FA.

QMatrix const & get_qmatrix()

Returns current QMatrix.