QMatrix¶

class dcprogs.likelihood.QMatrix(*args)[source]¶

Transition rate matrix.

Open-open transitions should be located in the top-left corner.

aa¶

Open to open transitions.

af¶

Open to close transitions.

fa¶

Open to close transitions.

ff¶

Open to close transitions.

matrix¶

Transition matrix itself.

nopen¶

Number of open states.

nshut¶

Number of shut states.

transpose()[source]¶

Swaps AA block with FF, AF block with FA, nopen with nshut.